| qualification | 29.09.1999 | CF América | - | Atlas Guadalajara | 2:0 | ||||
| qualification | 19.10.1999 | Deportivo Táchira | - | Atlas Guadalajara | 2:2 |  |
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| qualification | 21.10.1999 | CD Italchacao | - | Atlas Guadalajara | 3:3 | ||||
| qualification | 27.10.1999 | Atlas Guadalajara | - | CF América | 6:3 | ||||
| qualification | 11.11.1999 | Atlas Guadalajara | - | Deportivo Táchira | 3:0 | |
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| qualification | 18.11.1999 | Atlas Guadalajara | - | CD Italchacao | 2:2 | ||||
| Groupe 4 | 23.02.2000 | Atlas Guadalajara | - | River Plate | 1:1 | ||||
| Groupe 4 | 29.02.2000 | Atlético Nacional | - | Atlas Guadalajara | 2:3 |  |
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| Groupe 4 | 15.03.2000 | River Plate | - | Atlas Guadalajara | 3:2 | |
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| Groupe 4 | 22.03.2000 | Atlas Guadalajara | - | Atlético Nacional | 5:1 | |
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| Groupe 4 | 20.04.2000 | Universidad de Chile | - | Atlas Guadalajara | 3:2 | ||||
| tour des 16 | 03.05.2000 | Atlas Guadalajara | - | Atlético Junior | 2:0 | |
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| tour des 16 | 10.05.2000 | Atlético Junior | - | Atlas Guadalajara | 1:3 | |
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| Quarts de finale | 18.05.2000 | Atlas Guadalajara | - | Palmeiras | 0:2 | ||||
| Quarts de finale | 25.05.2000 | Palmeiras | - | Atlas Guadalajara | 3:2 |  |
Mexique