| 1er tour | 30.06.2016 | Široki Brijeg | - | Birkirkara FC | 1:1 |  |
 |
||
| 1er tour | 05.07.2016 | Birkirkara FC | - | Široki Brijeg | 2:0 | ||||
| 2e tour | 14.07.2016 | Birkirkara FC | - | Heart of Midlothian | 0:0 | ||||
| 2e tour | 21.07.2016 | Heart of Midlothian | - | Birkirkara FC | 1:2 | |
|||
| 3e tour | 28.07.2016 | Birkirkara FC | - | FK Krasnodar | 0:3 | ||||
| 3e tour | 04.08.2016 | FK Krasnodar | - | Birkirkara FC | 3:1 |
Malte