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| 07.11.2008 | 16:00 | FK Khimki | - | FK Tom Tomsk | 1:1 (0:0) | |
| 08.11.2008 | 13:00 | Krylia Sovetov | - | Spartak Nalchik | 2:0 (0:0) | |
| 15:30 | Shinnik Yaroslavl | - | FK Saturn | 0:1 (0:0) | ||
| 09.11.2008 | 12:00 | FK Amkar Perm | - | Zenit St. Petersburg | 1:1 (0:0) | |
| 14:00 | Spartak Moskva | - | Lokomotiv Moskva | 0:1 (0:1) | ||
| 14:30 | Dinamo Moskva | - | Luch-Energiya Vladivostok | 2:0 (1:0) | ||
| 17:00 | Rubin Kazan | - | Terek Grozny | 1:3 (1:1) | ||
| 10.11.2008 | 17:00 | FK Moskva | - | CSKA Moskva | 1:4 (0:2) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Rubin Kazan | 28 | 18 | 6 | 4 | 43:20 | 23 | 60 |
| 2 |
|
CSKA Moskva | 28 | 15 | 8 | 5 | 49:23 | 26 | 53 |
| 3 |
|
Dinamo Moskva | 28 | 14 | 8 | 6 | 38:28 | 10 | 50 |
| 4 |
|
FK Amkar Perm | 28 | 12 | 9 | 7 | 27:21 | 6 | 45 |
| 5 |
|
Zenit St. Petersburg | 28 | 11 | 11 | 6 | 55:35 | 20 | 44 |
| 6 |
|
Krylia Sovetov | 28 | 11 | 11 | 6 | 42:25 | 17 | 44 |
| 7 |
|
Spartak Moskva | 28 | 11 | 10 | 7 | 40:34 | 6 | 43 |
| 8 |
|
Lokomotiv Moskva | 28 | 11 | 8 | 9 | 32:29 | 3 | 41 |
| 9 |
|
FK Moskva | 28 | 8 | 11 | 9 | 29:33 | -4 | 35 |
| 10 |
|
Terek Grozny | 28 | 9 | 7 | 12 | 25:38 | -13 | 34 |
| 11 |
|
FK Saturn | 28 | 7 | 10 | 11 | 25:29 | -4 | 31 |
| 12 |
|
Spartak Nalchik | 28 | 8 | 7 | 13 | 28:36 | -8 | 31 |
| 13 |
|
FK Tom Tomsk | 28 | 7 | 8 | 13 | 23:36 | -13 | 29 |
| 14 |
|
FK Khimki | 28 | 5 | 9 | 14 | 31:50 | -19 | 24 |
| 15 |
|
Luch-Energiya Vladivostok | 28 | 3 | 11 | 14 | 22:48 | -26 | 20 |
| 16 |
|
Shinnik Yaroslavl | 28 | 4 | 6 | 18 | 24:48 | -24 | 18 |
