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| 30.09.2006 | 14:00 | FK Tom Tomsk | - | FK Amkar Perm | 1:3 (0:2) | |
| 14:00 | Shinnik Yaroslavl | - | FK Rostov | 1:6 (1:2) | ||
| 01.10.2006 | 12:00 | FK Moskva | - | Spartak Moskva | 3:3 (0:1) | |
| 12:30 | Zenit St. Petersburg | - | Spartak Nalchik | 4:0 (1:0) | ||
| 15:00 | Dinamo Moskva | - | Krylia Sovetov | 1:1 (1:1) | ||
| 16:00 | FK Saturn | - | CSKA Moskva | 2:2 (1:0) | ||
| 02.10.2006 | 16:30 | Torpedo Moskva | - | Luch-Energiya Vladivostok | 2:1 (1:0) | |
| 17:00 | Rubin Kazan | - | Lokomotiv Moskva | 2:4 (1:2) |
| » Classement | équipe recevante | à l'extérieur | Premier tour | Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Lokomotiv Moskva | 21 | 12 | 6 | 3 | 40:23 | 17 | 42 |
| 2 |
|
CSKA Moskva | 21 | 11 | 6 | 4 | 33:21 | 12 | 39 |
| 3 |
|
Zenit St. Petersburg | 21 | 10 | 8 | 3 | 33:21 | 12 | 38 |
| 4 |
|
Spartak Moskva | 21 | 9 | 10 | 2 | 41:26 | 15 | 37 |
| 5 |
|
FK Saturn | 21 | 6 | 12 | 3 | 25:16 | 9 | 30 |
| 6 |
|
FK Moskva | 21 | 6 | 11 | 4 | 29:25 | 4 | 29 |
| 7 |
|
FK Tom Tomsk | 21 | 7 | 7 | 7 | 25:22 | 3 | 28 |
| 8 |
|
Krylia Sovetov | 21 | 7 | 7 | 7 | 28:26 | 2 | 28 |
| 9 |
|
FK Rostov | 21 | 8 | 4 | 9 | 33:35 | -2 | 28 |
| 10 |
|
Spartak Nalchik | 21 | 7 | 6 | 8 | 24:26 | -2 | 27 |
| 11 |
|
Luch-Energiya Vladivostok | 21 | 7 | 4 | 10 | 23:27 | -4 | 25 |
| 12 |
|
Rubin Kazan | 21 | 6 | 7 | 8 | 22:31 | -9 | 25 |
| 13 |
|
FK Amkar Perm | 21 | 5 | 9 | 7 | 15:24 | -9 | 24 |
| 14 |
|
Torpedo Moskva | 21 | 3 | 9 | 9 | 17:28 | -11 | 18 |
| 15 |
|
Dinamo Moskva | 21 | 3 | 8 | 10 | 19:31 | -12 | 17 |
| 16 |
|
Shinnik Yaroslavl | 21 | 1 | 6 | 14 | 10:35 | -25 | 9 |
