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| 09.09.2016 | 19:00 | TSV 1860 Rosenheim | - | FC Augsburg II | 3:0 (0:0) | |
| 19:00 | TSV 1860 München II | - | SV Schalding-Heining | 2:0 (1:0) | ||
| 19:30 | FC Memmingen | - | SpVgg Greuther Fürth II | 1:1 (0:0) | ||
| 10.09.2016 | 13:00 | VfR Garching | - | Bayern München II | 1:0 (0:0) | |
| 14:00 | SpVgg Unterhaching | - | FV Illertissen | 5:0 (4:0) | ||
| 14:00 | Wacker Burghausen | - | SpVgg Bayern Hof | 2:2 (2:0) | ||
| 14:00 | SpVgg Bayreuth | - | 1. FC Schweinfurt 05 | 0:2 (0:1) | ||
| 17:00 | TSV Buchbach | - | SV Seligenporten | 0:0 (0:0) | ||
| 11.09.2016 | 14:00 | FC Ingolstadt 04 II | - | 1. FC Nürnberg II | 0:3 (0:2) |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Unterhaching | 10 | 9 | 1 | 0 | 32:7 | 25 | 28 |
| 2 |
|
Bayern München II | 10 | 5 | 4 | 1 | 16:10 | 6 | 19 |
| 3 |
|
1. FC Nürnberg II | 10 | 5 | 2 | 3 | 23:17 | 6 | 17 |
| 4 |
|
1. FC Schweinfurt 05 | 10 | 5 | 2 | 3 | 16:17 | -1 | 17 |
| 5 |
|
FC Augsburg II | 10 | 4 | 4 | 2 | 23:12 | 11 | 16 |
| 6 |
|
VfR Garching | 10 | 5 | 1 | 4 | 18:18 | 0 | 16 |
| 7 |
|
FV Illertissen | 10 | 4 | 2 | 4 | 15:15 | 0 | 14 |
| 8 |
|
FC Memmingen | 10 | 3 | 4 | 3 | 18:13 | 5 | 13 |
| 9 |
|
TSV 1860 Rosenheim | 10 | 4 | 1 | 5 | 9:11 | -2 | 13 |
| 10 |
|
SpVgg Greuther Fürth II | 10 | 3 | 3 | 4 | 15:13 | 2 | 12 |
| 11 |
|
SpVgg Bayreuth | 10 | 3 | 3 | 4 | 15:19 | -4 | 12 |
| 12 |
|
Wacker Burghausen | 10 | 2 | 4 | 4 | 15:20 | -5 | 10 |
| 13 |
|
SV Seligenporten | 10 | 3 | 1 | 6 | 13:32 | -19 | 10 |
| 14 |
|
TSV Buchbach | 10 | 2 | 3 | 5 | 13:18 | -5 | 9 |
| 15 |
|
SV Schalding-Heining | 10 | 1 | 5 | 4 | 13:16 | -3 | 8 |
| 16 |
|
FC Ingolstadt 04 II | 10 | 1 | 5 | 4 | 13:20 | -7 | 8 |
| 17 |
|
SpVgg Bayern Hof | 10 | 1 | 1 | 8 | 14:28 | -14 | 4 |
| 18 |
|
TSV 1860 München II | 10 | 6 | 2 | 2 | 0:0 | -5 | -43 |
| Play-off | |
| Relégation | |
| Relégation |
