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| Classement | Premier tour | » Second tour |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Montedio Yamagata | 19 | 14 | 2 | 3 | 39:15 | 24 | 44 |
| 2 |
|
Yokohama FC | 19 | 11 | 6 | 2 | 33:16 | 17 | 39 |
| 3 |
|
Shimizu S-Pulse | 19 | 12 | 3 | 4 | 34:19 | 15 | 39 |
| 4 |
|
Fagiano Okayama | 19 | 9 | 7 | 3 | 23:13 | 10 | 34 |
| 5 |
|
V-Varen Nagasaki | 19 | 9 | 6 | 4 | 37:23 | 14 | 33 |
| 6 |
|
Tokushima Vortis | 19 | 10 | 3 | 6 | 24:16 | 8 | 33 |
| 7 |
|
Vegalta Sendai | 19 | 9 | 4 | 6 | 27:24 | 3 | 31 |
| 8 |
|
JEF United Chiba | 19 | 10 | 1 | 8 | 28:26 | 2 | 31 |
| 9 |
|
Blaublitz Akita | 19 | 9 | 2 | 8 | 16:17 | -1 | 29 |
| 10 |
|
Iwaki FC | 19 | 8 | 3 | 8 | 26:23 | 3 | 27 |
| 11 |
|
Mito HollyHock | 19 | 7 | 5 | 7 | 22:29 | -7 | 26 |
| 12 |
|
Roasso Kumamoto | 19 | 8 | 1 | 10 | 29:29 | 0 | 25 |
| 13 |
|
Ventforet Kofu | 19 | 6 | 4 | 9 | 25:29 | -4 | 22 |
| 14 |
|
Fujieda MyFC | 19 | 7 | 1 | 11 | 23:32 | -9 | 22 |
| 15 |
|
Renofa Yamaguchi | 19 | 6 | 4 | 9 | 18:29 | -11 | 22 |
| 16 |
|
Tochigi SC | 19 | 4 | 8 | 7 | 19:20 | -1 | 20 |
| 17 |
|
Oita Trinita | 19 | 5 | 4 | 10 | 15:29 | -14 | 19 |
| 18 |
|
Ehime FC | 19 | 4 | 3 | 12 | 18:42 | -24 | 15 |
| 19 |
|
Kagoshima United | 19 | 4 | 2 | 13 | 19:26 | -7 | 14 |
| 20 |
|
Thespa Gunma | 19 | 2 | 3 | 14 | 13:31 | -18 | 9 |
| Promotion | |
| Play-off | |
| Relégation |
