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| 20.02.2009 | 18:00 | 1. FSV Mainz 05 | - | Hansa Rostock | 3:1 (1:1) | |
| 18:00 | FC Ingolstadt 04 | - | Alemannia Aachen | 0:0 (0:0) | ||
| 18:00 | SC Freiburg | - | FC Augsburg | 1:0 (0:0) | ||
| 22.02.2009 | 14:00 | TuS Koblenz | - | SpVgg Greuther Fürth | 3:0 (2:0) | |
| 14:00 | 1. FC Nürnberg | - | SV Wehen Wiesbaden | 1:0 (0:0) | ||
| 14:00 | MSV Duisburg | - | TSV 1860 München | 4:1 (2:0) | ||
| 14:00 | FSV Frankfurt | - | VfL Osnabrück | 1:0 (0:0) | ||
| 14:00 | Rot Weiss Ahlen | - | Rot-Weiß Oberhausen | 1:3 (0:1) | ||
| 23.02.2009 | 20:15 | FC St. Pauli | - | 1. FC Kaiserslautern | 2:0 (0:0) |
| # | Équipe | M. | G. | N. | P. | Buts | Diff. | Pts. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SC Freiburg | 21 | 13 | 3 | 5 | 36:20 | 16 | 42 |
| 2 |
|
1. FSV Mainz 05 | 21 | 11 | 6 | 4 | 42:24 | 18 | 39 |
| 3 |
|
SpVgg Greuther Fürth | 21 | 10 | 6 | 5 | 45:29 | 16 | 36 |
| 4 |
|
1. FC Kaiserslautern | 21 | 10 | 5 | 6 | 36:27 | 9 | 35 |
| 5 |
|
Alemannia Aachen | 21 | 9 | 6 | 6 | 35:25 | 10 | 33 |
| 6 |
|
MSV Duisburg | 21 | 8 | 8 | 5 | 32:22 | 10 | 32 |
| 7 |
|
1. FC Nürnberg | 21 | 8 | 8 | 5 | 30:23 | 7 | 32 |
| 8 |
|
FC St. Pauli | 21 | 9 | 4 | 8 | 34:38 | -4 | 31 |
| 9 |
|
FC Augsburg | 21 | 8 | 5 | 8 | 27:26 | 1 | 29 |
| 10 |
|
Rot-Weiß Oberhausen | 21 | 8 | 4 | 9 | 23:34 | -11 | 28 |
| 11 |
|
Rot Weiss Ahlen | 21 | 8 | 3 | 10 | 28:40 | -12 | 27 |
| 12 |
|
TSV 1860 München | 21 | 7 | 5 | 9 | 25:26 | -1 | 26 |
| 13 |
|
FSV Frankfurt | 21 | 5 | 8 | 8 | 23:28 | -5 | 23 |
| 14 |
|
FC Ingolstadt 04 | 21 | 6 | 5 | 10 | 24:36 | -12 | 23 |
| 15 |
|
TuS Koblenz | 21 | 6 | 6 | 9 | 29:33 | -4 | 21 |
| 16 |
|
VfL Osnabrück | 21 | 4 | 8 | 9 | 28:41 | -13 | 20 |
| 17 |
|
Hansa Rostock | 21 | 4 | 6 | 11 | 30:39 | -9 | 18 |
| 18 |
|
SV Wehen Wiesbaden | 21 | 3 | 8 | 10 | 21:37 | -16 | 17 |
| Promotion | |
| Relégation | |
| Relégation | |
| Relégation |
